HL_8I9Y_004

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_004 not in the Motif Atlas

Geometric match to HL_1NBS_006

Geometric discrepancy: 0.2453

The information below is about HL_1NBS_006

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8I9Y|1|C1|C|129
8I9Y|1|C1|U|130
8I9Y|1|C1|U|131
8I9Y|1|C1|C|132
8I9Y|1|C1|G|133
8I9Y|1|C1|G|134

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CC

Ribosome biogenesis protein ERB1

Chain LG

60S ribosomal protein L8

Chain LX

60S ribosomal protein L25-like protein

Chain Lh

dolichyl-diphosphooligosaccharide--protein glycotransferase