HL_8I9Y_021

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_021 not in the Motif Atlas

Geometric match to HL_5D5L_001

Geometric discrepancy: 0.2204

The information below is about HL_5D5L_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8I9Y|1|C1|C|892
8I9Y|1|C1|G|893
8I9Y|1|C1|A|894
8I9Y|1|C1|A|895
8I9Y|1|C1|A|896
8I9Y|1|C1|G|897

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CS

AdoMet-dependent rRNA methyltransferase SPB1

Chain CT

Nucleolar complex-associated protein 3

Chain CX

60S ribosomal subunit-like protein