HL_8I9Y_026
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9Y_026 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.2277
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8I9Y|1|C1|G|1130
8I9Y|1|C1|G|1131
8I9Y|1|C1|A|1132
8I9Y|1|C1|U|1133
8I9Y|1|C1|G|1134
8I9Y|1|C1|A|1135
8I9Y|1|C1|A|1136
8I9Y|1|C1|C|1137
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CL
- Putative GTP binding protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
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