HL_8I9Y_038

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUUGUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_038 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.4995

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8I9Y|1|C1|G|1698
8I9Y|1|C1|U|1699
8I9Y|1|C1|U|1700
8I9Y|1|C1|U|1701
8I9Y|1|C1|G|1702
8I9Y|1|C1|U|1703
8I9Y|1|C1|C|1704

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LR

Ribosomal protein L19