HL_8I9Y_049

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8I9Y|1|C1|G|2856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_049 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.2221

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8I9Y|1|C1|A|2855
8I9Y|1|C1|G|2856
8I9Y|1|C1|C|2857
8I9Y|1|C1|A|2858
8I9Y|1|C1|G|2859
8I9Y|1|C1|A|2860
8I9Y|1|C1|A|2861
8I9Y|1|C1|U|2862

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain LH

60S ribosomal protein l9-like protein