HL_8I9Y_056

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCGAAGUG

Length

9 nucleotides

Bulged bases

8I9Y|1|C1|A|3185, 8I9Y|1|C1|A|3186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_056 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3233

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8I9Y|1|C1|C|3181
8I9Y|1|C1|U|3182
8I9Y|1|C1|C|3183
8I9Y|1|C1|G|3184
8I9Y|1|C1|A|3185
8I9Y|1|C1|A|3186
8I9Y|1|C1|G|3187
8I9Y|1|C1|U|3188
8I9Y|1|C1|G|3189

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CO

DUF2423 domain-containing protein

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein