HL_8I9Z_013

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

8I9Z|1|C1|U|534, 8I9Z|1|C1|C|535, 8I9Z|1|C1|C|536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Z_013 not in the Motif Atlas

Homologous match to HL_5TBW_012

Geometric discrepancy: 0.4402

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8I9Z|1|C1|C|532
8I9Z|1|C1|C|533
8I9Z|1|C1|U|534
8I9Z|1|C1|C|535
8I9Z|1|C1|C|536
8I9Z|1|C1|G|537
8I9Z|1|C1|G|538
8I9Z|1|C1|G|539

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain LS

60S ribosomal protein L20