HL_8I9Z_061
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 8I9Z|1|C2|C|110, 8I9Z|1|C2|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9Z_061 not in the Motif Atlas
- Homologous match to HL_5TBW_075
- Geometric discrepancy: 0.3828
- The information below is about HL_5TBW_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8I9Z|1|C2|C|108
8I9Z|1|C2|A|109
8I9Z|1|C2|C|110
8I9Z|1|C2|A|111
8I9Z|1|C2|U|112
8I9Z|1|C2|U|113
8I9Z|1|C2|G|114
Current chains
- Chain C2
- RNA (319-MER)
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain CJ
- Pescadillo homolog
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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