HL_8IA0_007
3D structure
- PDB id
- 8IA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGAGAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8IA0|1|C1|G|211, 8IA0|1|C1|A|212, 8IA0|1|C1|G|213
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IA0_007 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1173
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
8IA0|1|C1|G|209
8IA0|1|C1|U|210
8IA0|1|C1|G|211
8IA0|1|C1|A|212
8IA0|1|C1|G|213
8IA0|1|C1|A|214
8IA0|1|C1|G|215
8IA0|1|C1|C|216
8IA0|1|C1|C|217
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
Coloring options: