HL_8IA0_012

3D structure

PDB id

8IA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUCUC

Length

6 nucleotides

Bulged bases

8IA0|1|C1|U|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IA0_012 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.192

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8IA0|1|C1|G|455
8IA0|1|C1|U|456
8IA0|1|C1|U|457
8IA0|1|C1|C|458
8IA0|1|C1|U|459
8IA0|1|C1|C|460

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CV

Putative 60S ribosomal protein

Chain LF

60S ribosomal protein l7-like protein