HL_8IA0_039

3D structure

PDB id

8IA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACUUCU

Length

6 nucleotides

Bulged bases

8IA0|1|C1|U|1741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IA0_039 not in the Motif Atlas

Homologous match to HL_5TBW_039

Geometric discrepancy: 0.3453

The information below is about HL_5TBW_039

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_61202.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

8IA0|1|C1|A|1739
8IA0|1|C1|C|1740
8IA0|1|C1|U|1741
8IA0|1|C1|U|1742
8IA0|1|C1|C|1743
8IA0|1|C1|U|1744

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LR

Ribosomal protein L19

Chain LX

60S ribosomal protein L25-like protein