HL_8IA0_050

3D structure

PDB id

8IA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAAUU

Length

5 nucleotides

Bulged bases

8IA0|1|C1|U|2739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IA0_050 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3619

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IA0|1|C1|A|2736
8IA0|1|C1|A|2737
8IA0|1|C1|A|2738
8IA0|1|C1|U|2739
8IA0|1|C1|U|2740

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CP

RNA methyltransferase nop2-like protein

Chain Lq

Ribosomal protein