HL_8IDT_014

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUCCCGGCGCGCCGGG

Length

16 nucleotides

Bulged bases

8IDT|1|2|C|995, 8IDT|1|2|G|996, 8IDT|1|2|C|1047, 8IDT|1|2|G|1048

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDT_014 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.2469

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

8IDT|1|2|C|988
8IDT|1|2|U|989
8IDT|1|2|C|990
8IDT|1|2|C|991
8IDT|1|2|C|992
8IDT|1|2|G|993
8IDT|1|2|G|994
8IDT|1|2|C|995
8IDT|1|2|G|996
8IDT|1|2|C|1047
8IDT|1|2|G|1048
8IDT|1|2|C|1049
8IDT|1|2|C|1050
8IDT|1|2|G|1051
8IDT|1|2|G|1064
8IDT|1|2|G|1065

Current chains

Chain 2

28S rRNA

Nearby chains

Chain o

60S ribosomal protein L6