HL_8IDT_031

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8IDT|1|2|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDT_031 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2983

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8IDT|1|2|C|1978
8IDT|1|2|A|1979
8IDT|1|2|U|1980
8IDT|1|2|G|1981
8IDT|1|2|G|1982
8IDT|1|2|A|1983
8IDT|1|2|A|1984
8IDT|1|2|G|1985
8IDT|1|2|U|1986
8IDT|1|2|C|1987
8IDT|1|2|G|1988

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain y

60S ribosomal protein L12