HL_8IDY_004

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8IDY|1|2|G|134, 8IDY|1|2|G|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDY_004 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.3031

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IDY|1|2|C|131
8IDY|1|2|G|132
8IDY|1|2|C|133
8IDY|1|2|G|134
8IDY|1|2|G|135
8IDY|1|2|C|136
8IDY|1|2|G|137

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain H

60S ribosomal protein L35

Chain M

60S ribosomal protein L37

Chain U

60S ribosomal protein L15