HL_8IDY_038

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGGCCUCCGUUG

Length

15 nucleotides

Bulged bases

8IDY|1|2|C|2488, 8IDY|1|2|C|2489, 8IDY|1|2|U|2490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDY_038 not in the Motif Atlas

Geometric match to HL_5J7L_213

Geometric discrepancy: 0.3659

The information below is about HL_5J7L_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90774.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8IDY|1|2|C|2482
8IDY|1|2|G|2483
8IDY|1|2|A|2484
8IDY|1|2|U|2485
8IDY|1|2|G|2486
8IDY|1|2|G|2487
8IDY|1|2|C|2488
8IDY|1|2|C|2489
8IDY|1|2|U|2490
8IDY|1|2|C|2491
8IDY|1|2|C|2492
8IDY|1|2|G|2493
8IDY|1|2|U|2494
8IDY|1|2|U|2495
8IDY|1|2|G|2496

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain g

60S ribosomal protein L23a