HL_8IDY_056

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCGCGCCG

Length

9 nucleotides

Bulged bases

8IDY|1|2|G|4141, 8IDY|1|2|C|4144, 8IDY|1|2|C|4145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDY_056 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3526

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8IDY|1|2|C|4138
8IDY|1|2|G|4139
8IDY|1|2|C|4140
8IDY|1|2|G|4141
8IDY|1|2|C|4142
8IDY|1|2|G|4143
8IDY|1|2|C|4144
8IDY|1|2|C|4145
8IDY|1|2|G|4146

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a