HL_8IDY_058
3D structure
- PDB id
- 8IDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State F
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCAAACGGUA(6MZ)CG
- Length
- 13 nucleotides
- Bulged bases
- 8IDY|1|2|A|4214, 8IDY|1|2|C|4221
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IDY_058 not in the Motif Atlas
- Homologous match to HL_8P9A_166
- Geometric discrepancy: 0.1845
- The information below is about HL_8P9A_166
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.1
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8IDY|1|2|U|4210
8IDY|1|2|C|4211
8IDY|1|2|A|4212
8IDY|1|2|A|4213
8IDY|1|2|A|4214
8IDY|1|2|C|4215
8IDY|1|2|G|4216
8IDY|1|2|G|4217
8IDY|1|2|U|4218
8IDY|1|2|A|4219
8IDY|1|2|6MZ|4220
8IDY|1|2|C|4221
8IDY|1|2|G|4222
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L29
- Chain R
- Translation machinery-associated protein 16
- Chain c
- 60S ribosomal protein L21
- Chain u
- Protein SDA1 homolog
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