HL_8IE3_015

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUGUCCCCAGU

Length

12 nucleotides

Bulged bases

8IE3|1|2|G|1178, 8IE3|1|2|U|1179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IE3_015 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3706

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IE3|1|2|A|1175
8IE3|1|2|C|1176
8IE3|1|2|U|1177
8IE3|1|2|G|1178
8IE3|1|2|U|1179
8IE3|1|2|C|1180
8IE3|1|2|C|1181
8IE3|1|2|C|1182
8IE3|1|2|C|1183
8IE3|1|2|A|1184
8IE3|1|2|G|1185
8IE3|1|2|U|1186

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain r

60S ribosomal protein L5