HL_8IE3_020

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

8IE3|1|2|G|1408, 8IE3|1|2|U|1410, 8IE3|1|2|C|1411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IE3_020 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2966

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8IE3|1|2|C|1405
8IE3|1|2|G|1406
8IE3|1|2|C|1407
8IE3|1|2|G|1408
8IE3|1|2|C|1409
8IE3|1|2|U|1410
8IE3|1|2|C|1411
8IE3|1|2|G|1412

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29