HL_8IE3_025

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8IE3|1|2|A|1630, 8IE3|1|2|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IE3_025 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1542

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8IE3|1|2|G|1627
8IE3|1|2|C|1628
8IE3|1|2|G|1629
8IE3|1|2|A|1630
8IE3|1|2|A|1631
8IE3|1|2|A|1632
8IE3|1|2|G|1633
8IE3|1|2|A|1634
8IE3|1|2|C|1635

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain M

60S ribosomal protein L37

Chain m

60S ribosomal protein L8