HL_8IE3_056

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCGCGCCG

Length

9 nucleotides

Bulged bases

8IE3|1|2|C|4142

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IE3_056 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.243

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IE3|1|2|C|4138
8IE3|1|2|G|4139
8IE3|1|2|C|4140
8IE3|1|2|G|4141
8IE3|1|2|C|4142
8IE3|1|2|G|4143
8IE3|1|2|C|4144
8IE3|1|2|C|4145
8IE3|1|2|G|4146

Current chains

Chain 2

28S rRNA

Nearby chains