HL_8IE3_078
3D structure
- PDB id
- 8IE3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8IE3|1|8|A|82, 8IE3|1|8|U|85
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IE3_078 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.4051
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8IE3|1|8|G|68
8IE3|1|8|U|69
8IE3|1|8|G|70
8IE3|1|8|A|71
8IE3|1|8|A|72
8IE3|1|8|U|73
8IE3|1|8|U|74
8IE3|1|8|G|75
8IE3|1|8|C|76
8IE3|1|8|A|77
8IE3|1|8|G|78
8IE3|1|8|G|79
8IE3|1|8|A|80
8IE3|1|8|C|81
8IE3|1|8|A|82
8IE3|1|8|C|83
8IE3|1|8|A|84
8IE3|1|8|U|85
8IE3|1|8|U|86
8IE3|1|8|G|87
8IE3|1|8|A|88
8IE3|1|8|U|89
8IE3|1|8|C|90
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- GTP-binding protein 4
- Chain H
- 60S ribosomal protein L35
- Chain M
- 60S ribosomal protein L37
- Chain P
- 60S ribosomal protein L39
- Chain h
- 60S ribosomal protein L26
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