HL_8IE3_079

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

8IE3|1|8|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IE3_079 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.2278

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8IE3|1|8|C|107
8IE3|1|8|A|108
8IE3|1|8|C|109
8IE3|1|8|U|110
8IE3|1|8|U|111
8IE3|1|8|G|112

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain M

60S ribosomal protein L37

Chain P

60S ribosomal protein L39

Chain g

60S ribosomal protein L23a