HL_8IFB_019

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFB_019 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.1616

The information below is about HL_2ZZN_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_57684.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8IFB|1|A|G|521
8IFB|1|A|C|522
8IFB|1|A|A|523
8IFB|1|A|G|524
8IFB|1|A|C|525
8IFB|1|A|C|526
8IFB|1|A|G7M|527
8IFB|1|A|C|528

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 7

mRNA

Chain L

30S ribosomal protein S12