HL_8IFB_021
3D structure
- PDB id
- 8IFB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-bound E.coli 70S ribosome in the PURE system
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFB_021 not in the Motif Atlas
- Homologous match to HL_5J7L_015
- Geometric discrepancy: 0.0699
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8IFB|1|A|C|689
8IFB|1|A|G|690
8IFB|1|A|G|691
8IFB|1|A|U|692
8IFB|1|A|G|693
8IFB|1|A|A|694
8IFB|1|A|A|695
8IFB|1|A|A|696
8IFB|1|A|U|697
8IFB|1|A|G|698
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 7
- mRNA
- Chain G
- 30S ribosomal protein S7
- Chain K
- 30S ribosomal protein S11
- Chain U
- 30S ribosomal protein S21
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: