HL_8IFC_014

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFC_014 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0874

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8IFC|1|A|A|320
8IFC|1|A|A|321
8IFC|1|A|C|322
8IFC|1|A|U|323
8IFC|1|A|G|324
8IFC|1|A|A|325
8IFC|1|A|G|326
8IFC|1|A|A|327
8IFC|1|A|C|328
8IFC|1|A|A|329
8IFC|1|A|C|330
8IFC|1|A|G|331
8IFC|1|A|G|332
8IFC|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20