HL_8IFC_052

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

8IFC|1|a|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFC_052 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.24

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8IFC|1|a|C|544
8IFC|1|a|U|545
8IFC|1|a|U|546
8IFC|1|a|A|547
8IFC|1|a|G|548
8IFC|1|a|G|549

Current chains

Chain a

23S ribosomal RNA

Nearby chains