HL_8IFC_108
3D structure
- PDB id
- 8IFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-bound E.coli 70S ribosome in the PURE system
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFC_108 not in the Motif Atlas
- Homologous match to HL_5J8B_118
- Geometric discrepancy: 0.1654
- The information below is about HL_5J8B_118
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 54
Unit IDs
8IFC|1|5|A|31
8IFC|1|5|PSU|32
8IFC|1|5|U|33
8IFC|1|5|G|34
8IFC|1|5|A|35
8IFC|1|5|A|36
8IFC|1|5|MIA|37
8IFC|1|5|A|38
8IFC|1|5|PSU|39
Current chains
- Chain 5
- A-site tRNA-Phe
Nearby chains
- Chain 7
- mRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 30S ribosomal protein S12
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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