HL_8IFC_109

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFC_109 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.12

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8IFC|1|a|G|2304
8IFC|1|a|U|2305
8IFC|1|a|C|2306
8IFC|1|a|G|2307
8IFC|1|a|G|2308
8IFC|1|a|A|2309
8IFC|1|a|C|2310
8IFC|1|a|A|2311
8IFC|1|a|U|2312

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L5