HL_8IFD_007

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8IFD|1|1A|G|232, 8IFD|1|1A|U|233, 8IFD|1|1A|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1479

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8IFD|1|1A|G|230
8IFD|1|1A|U|231
8IFD|1|1A|G|232
8IFD|1|1A|U|233
8IFD|1|1A|G|234
8IFD|1|1A|A|235
8IFD|1|1A|G|236
8IFD|1|1A|G|237
8IFD|1|1A|C|238

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 1F

60S ribosomal protein L4

Chain 2S

60S ribosomal protein L26