HL_8IFD_012

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCGCGCGG

Length

8 nucleotides

Bulged bases

8IFD|1|1A|G|642

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_012 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3897

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8IFD|1|1A|C|516
8IFD|1|1A|C|517
8IFD|1|1A|G|518
8IFD|1|1A|C|519
8IFD|1|1A|G|642
8IFD|1|1A|C|643
8IFD|1|1A|G|644
8IFD|1|1A|G|645

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2F

60S ribosomal protein L13