HL_8IFD_017

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8IFD|1|1A|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_017 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0555

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8IFD|1|1A|U|1317
8IFD|1|1A|C|1318
8IFD|1|1A|U|1319
8IFD|1|1A|U|1320
8IFD|1|1A|G|1321
8IFD|1|1A|A|1322
8IFD|1|1A|A|1323
8IFD|1|1A|A|1324
8IFD|1|1A|C|1325
8IFD|1|1A|A|1326

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2U

60S ribosomal protein L27a

Chain 2Y

60S ribosomal protein L32