HL_8IFD_058

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GCGCGCC

Length

7 nucleotides

Bulged bases

8IFD|1|1A|C|4144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_058 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3828

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8IFD|1|1A|G|4139
8IFD|1|1A|C|4140
8IFD|1|1A|G|4141
8IFD|1|1A|C|4142
8IFD|1|1A|G|4143
8IFD|1|1A|C|4144
8IFD|1|1A|C|4145

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains