HL_8IFD_066

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_066 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1346

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8IFD|1|1A|C|4417
8IFD|1|1A|G|4418
8IFD|1|1A|U|4419
8IFD|1|1A|U|4420
8IFD|1|1A|C|4421
8IFD|1|1A|A|4422
8IFD|1|1A|U|4423
8IFD|1|1A|A|4424
8IFD|1|1A|G|4425

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like

Chain 2g

Large ribosomal subunit protein eL40