HL_8IFD_076

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

8IFD|1|1A|C|5023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_076 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3162

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IFD|1|1A|C|5021
8IFD|1|1A|U|5022
8IFD|1|1A|C|5023
8IFD|1|1A|C|5024
8IFD|1|1A|C|5025
8IFD|1|1A|U|5026
8IFD|1|1A|C|5027
8IFD|1|1A|G|5028

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2O

60S ribosomal protein L22

Chain 2t

40S ribosomal protein S8