HL_8IFD_088

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

8IFD|1|2m|C|325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_088 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3737

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8IFD|1|2m|C|322
8IFD|1|2m|C|323
8IFD|1|2m|C|324
8IFD|1|2m|C|325
8IFD|1|2m|C|326
8IFD|1|2m|G|327
8IFD|1|2m|U|328
8IFD|1|2m|G|329

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2Q

60S ribosomal protein L24

Chain 3H

40S ribosomal protein S6