HL_8IFD_095

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCCACUUUAAAUCCUUCCG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_095 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3283

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IFD|1|2m|U|566
8IFD|1|2m|C|567
8IFD|1|2m|C|568
8IFD|1|2m|A|569
8IFD|1|2m|C|570
8IFD|1|2m|U|571
8IFD|1|2m|U|572
8IFD|1|2m|U|573
8IFD|1|2m|A|574
8IFD|1|2m|A|575
8IFD|1|2m|A|576
8IFD|1|2m|U|577
8IFD|1|2m|C|578
8IFD|1|2m|C|579
8IFD|1|2m|U|580
8IFD|1|2m|U|581
8IFD|1|2m|C|582
8IFD|1|2m|C|583
8IFD|1|2m|G|584

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3I

40S ribosomal protein S9

Chain 3N

40S ribosomal protein S24