HL_8IFD_099

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCG

Length

18 nucleotides

Bulged bases

8IFD|1|2m|U|887, 8IFD|1|2m|G|891, 8IFD|1|2m|U|892, 8IFD|1|2m|U|893, 8IFD|1|2m|G|894, 8IFD|1|2m|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_099 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3811

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8IFD|1|2m|C|884
8IFD|1|2m|U|885
8IFD|1|2m|A|886
8IFD|1|2m|U|887
8IFD|1|2m|U|888
8IFD|1|2m|U|889
8IFD|1|2m|U|890
8IFD|1|2m|G|891
8IFD|1|2m|U|892
8IFD|1|2m|U|893
8IFD|1|2m|G|894
8IFD|1|2m|G|895
8IFD|1|2m|U|896
8IFD|1|2m|U|897
8IFD|1|2m|U|898
8IFD|1|2m|U|899
8IFD|1|2m|C|900
8IFD|1|2m|G|901

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2v

40S ribosomal protein S11

Chain 3H

40S ribosomal protein S6