HL_8IFD_104

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_104 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0823

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8IFD|1|2m|G|1141
8IFD|1|2m|G|1142
8IFD|1|2m|A|1143
8IFD|1|2m|A|1144
8IFD|1|2m|A|1145
8IFD|1|2m|C|1146

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3C

40S ribosomal protein S26

Chain 3G

40S ribosomal protein S2