HL_8IFD_111

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

8IFD|1|2m|U|1462, 8IFD|1|2m|C|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_111 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.4827

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

8IFD|1|2m|C|1460
8IFD|1|2m|G|1461
8IFD|1|2m|U|1462
8IFD|1|2m|U|1463
8IFD|1|2m|C|1464
8IFD|1|2m|A|1465
8IFD|1|2m|G|1466

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2y

40S ribosomal protein S17

Chain 3D

40S ribosomal protein S28

Chain 3F

Receptor of activated protein C kinase 1