Motif HL_37369.1 Version HL_37369.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_222 | 8C3A | 0.6174 | 0 | GNRA (H) | CM | SSU rRNA | U | 1382 | U | 1383 | U | 1384 | C | 1385 | A | 1386 | A | 1387 | G | 1388 | cWW | tSH |
| 2 | HL_8P9A_220 | 8P9A | 0.5052 | 0 | GNRA (H) | sR | SSU rRNA | U | 1396 | U | 1397 | U | 1398 | C | 1399 | A | 1400 | A | 1401 | G | 1402 | cWW | |
| 3 | HL_4WF9_008 | 4WF9 | 0.0946 | 0 | X | LSU rRNA | C | 249 | G | 250 | G | 251 | C | 252 | G | 253 | A | 254 | G | 255 | cWW | ntSH | |
| 4 | HL_5J7L_141 | 5J7L | 0.0904 | 0 | DA | LSU rRNA | C | 246 | G | 247 | G | 248 | C | 249 | G | 250 | A | 251 | G | 252 | cWW | ntSH | |
| 5 | HL_7A0S_008 | 7A0S | 0.0788 | 0 | X | LSU rRNA | C | 223 | G | 224 | G | 225 | C | 226 | G | 227 | A | 228 | G | 229 | cWW | ntSH | |
| 6 | HL_9DFE_007 | 9DFE | 0.0000 | 0 | 1A | LSU rRNA | C | 246 | G | 247 | G | 248 | C | 249 | G | 250 | A | 251 | G | 252 | cWW | tSH | |
| 7 | HL_8P9A_115 | 8P9A | 0.0792 | 0 | AR | LSU rRNA | C | 90 | G | 91 | G | 92 | C | 93 | G | 94 | A | 95 | G | 96 | cWW | ntSH | |
| 8 | HL_4V9F_008 | 4V9F | 0.1451 | 0 | 0 | LSU rRNA | C | 217 | C | 218 | G | 219 | C | 220 | G | 221 | A | 222 | G | 223 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGCGAG | 5 |
| UUUCAAG | 2 |
| CCGCGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCGA | 5 |
| UUCAA | 2 |
| CGCGA | 1 |
- Annotations
-
- (6)
- GNRA (H) (2)
- Basepair signature
- cWW-tSH-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.28 | Max 0.63
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