RNA 3D Hub //

Motif HL_37369.1 Version HL_37369.1 of this group appears in releases 3.91 to 3.94

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 71-72-6
1 HL_8C3A_2228C3A0.61740GNRA (H)CM SSU rRNAU1382U1383U1384C1385A1386A1387G1388cWWtSH
2 HL_8P9A_2208P9A0.50520GNRA (H)sR SSU rRNAU1396U1397U1398C1399A1400A1401G1402cWW
3 HL_4WF9_0084WF90.09460X LSU rRNAC249G250G251C252G253A254G255cWWntSH
4 HL_5J7L_1415J7L0.09040DA LSU rRNAC246G247G248C249G250A251G252cWWntSH
5 HL_7A0S_0087A0S0.07880X LSU rRNAC223G224G225C226G227A228G229cWWntSH
6 HL_9DFE_0079DFE0.000001A LSU rRNAC246G247G248C249G250A251G252cWWtSH
7 HL_8P9A_1158P9A0.07920AR LSU rRNAC90G91G92C93G94A95G96cWWntSH
8 HL_4V9F_0084V9F0.145100 LSU rRNAC217C218G219C220G221A222G223cWWtSH

3D structures

Complete motif including flanking bases
SequenceCounts
CGGCGAG5
UUUCAAG2
CCGCGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GGCGA5
UUCAA2
CGCGA1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusNew id, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • GNRA (H) (2)
    • Basepair signature
    cWW-tSH-F-F-F
    Heat map statistics
    Min 0.08 | Avg 0.28 | Max 0.63
    Help

    Coloring options:

    HL_8C3A_222:HL_8C3A_222 = 0HL_8C3A_222:HL_8P9A_220 = 0.4915HL_8C3A_222:HL_4WF9_008 = 0.6019HL_8C3A_222:HL_5J7L_141 = 0.6172HL_8C3A_222:HL_7A0S_008 = 0.6128HL_8C3A_222:HL_9DFE_007 = 0.6174HL_8C3A_222:HL_8P9A_115 = 0.6327HL_8C3A_222:HL_4V9F_008 = 0.6054HL_8P9A_220:HL_8C3A_222 = 0.4915HL_8P9A_220:HL_8P9A_220 = 0HL_8P9A_220:HL_4WF9_008 = 0.4693HL_8P9A_220:HL_5J7L_141 = 0.4889HL_8P9A_220:HL_7A0S_008 = 0.4944HL_8P9A_220:HL_9DFE_007 = 0.5052HL_8P9A_220:HL_8P9A_115 = 0.5278HL_8P9A_220:HL_4V9F_008 = 0.4992HL_4WF9_008:HL_8C3A_222 = 0.6019HL_4WF9_008:HL_8P9A_220 = 0.4693HL_4WF9_008:HL_4WF9_008 = 0HL_4WF9_008:HL_5J7L_141 = 0.1001HL_4WF9_008:HL_7A0S_008 = 0.1098HL_4WF9_008:HL_9DFE_007 = 0.0946HL_4WF9_008:HL_8P9A_115 = 0.1231HL_4WF9_008:HL_4V9F_008 = 0.1512HL_5J7L_141:HL_8C3A_222 = 0.6172HL_5J7L_141:HL_8P9A_220 = 0.4889HL_5J7L_141:HL_4WF9_008 = 0.1001HL_5J7L_141:HL_5J7L_141 = 0HL_5J7L_141:HL_7A0S_008 = 0.1024HL_5J7L_141:HL_9DFE_007 = 0.0904HL_5J7L_141:HL_8P9A_115 = 0.1356HL_5J7L_141:HL_4V9F_008 = 0.1462HL_7A0S_008:HL_8C3A_222 = 0.6128HL_7A0S_008:HL_8P9A_220 = 0.4944HL_7A0S_008:HL_4WF9_008 = 0.1098HL_7A0S_008:HL_5J7L_141 = 0.1024HL_7A0S_008:HL_7A0S_008 = 0HL_7A0S_008:HL_9DFE_007 = 0.0788HL_7A0S_008:HL_8P9A_115 = 0.1351HL_7A0S_008:HL_4V9F_008 = 0.1399HL_9DFE_007:HL_8C3A_222 = 0.6174HL_9DFE_007:HL_8P9A_220 = 0.5052HL_9DFE_007:HL_4WF9_008 = 0.0946HL_9DFE_007:HL_5J7L_141 = 0.0904HL_9DFE_007:HL_7A0S_008 = 0.0788HL_9DFE_007:HL_9DFE_007 = 0HL_9DFE_007:HL_8P9A_115 = 0.0792HL_9DFE_007:HL_4V9F_008 = 0.1451HL_8P9A_115:HL_8C3A_222 = 0.6327HL_8P9A_115:HL_8P9A_220 = 0.5278HL_8P9A_115:HL_4WF9_008 = 0.1231HL_8P9A_115:HL_5J7L_141 = 0.1356HL_8P9A_115:HL_7A0S_008 = 0.1351HL_8P9A_115:HL_9DFE_007 = 0.0792HL_8P9A_115:HL_8P9A_115 = 0HL_8P9A_115:HL_4V9F_008 = 0.148HL_4V9F_008:HL_8C3A_222 = 0.6054HL_4V9F_008:HL_8P9A_220 = 0.4992HL_4V9F_008:HL_4WF9_008 = 0.1512HL_4V9F_008:HL_5J7L_141 = 0.1462HL_4V9F_008:HL_7A0S_008 = 0.1399HL_4V9F_008:HL_9DFE_007 = 0.1451HL_4V9F_008:HL_8P9A_115 = 0.148HL_4V9F_008:HL_4V9F_008 = 0HL_8C3A_222HL_8P9A_220HL_4WF9_008HL_5J7L_141HL_7A0S_008HL_9DFE_007HL_8P9A_115HL_4V9F_008Discrepancy0.000.100.200.300.400.500.60
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