HL_8IFD_114

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

8IFD|1|2m|A|1663, 8IFD|1|2m|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_114 not in the Motif Atlas

Homologous match to HL_8C3A_225

Geometric discrepancy: 0.3197

The information below is about HL_8C3A_225

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01609.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

17

Unit IDs

8IFD|1|2m|G|1658
8IFD|1|2m|U|1659
8IFD|1|2m|C|1660
8IFD|1|2m|A|1661
8IFD|1|2m|U|1662
8IFD|1|2m|A|1663
8IFD|1|2m|A|1664
8IFD|1|2m|G|1665
8IFD|1|2m|C|1666

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 21

40S ribosomal protein S20

Chain 2x

40S ribosomal protein S16

Chain 3E

40S ribosomal protein S29