HL_8IFE_012

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CCGCGCGG

Length

8 nucleotides

Bulged bases

8IFE|1|1A|G|642

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_012 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3966

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8IFE|1|1A|C|516
8IFE|1|1A|C|517
8IFE|1|1A|G|518
8IFE|1|1A|C|519
8IFE|1|1A|G|642
8IFE|1|1A|C|643
8IFE|1|1A|G|644
8IFE|1|1A|G|645

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2F

60S ribosomal protein L13