HL_8IFE_014

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUCCCGGCGCGCCGGG

Length

16 nucleotides

Bulged bases

8IFE|1|1A|C|991, 8IFE|1|1A|G|996, 8IFE|1|1A|C|1047

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_014 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3236

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8IFE|1|1A|C|988
8IFE|1|1A|U|989
8IFE|1|1A|C|990
8IFE|1|1A|C|991
8IFE|1|1A|C|992
8IFE|1|1A|G|993
8IFE|1|1A|G|994
8IFE|1|1A|C|995
8IFE|1|1A|G|996
8IFE|1|1A|C|1047
8IFE|1|1A|G|1048
8IFE|1|1A|C|1049
8IFE|1|1A|C|1050
8IFE|1|1A|G|1051
8IFE|1|1A|G|1064
8IFE|1|1A|G|1065

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6