HL_8IFE_021
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- CCUCUCCAGUCCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFE_021 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.3141
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8IFE|1|1A|C|1436
8IFE|1|1A|C|1437
8IFE|1|1A|U|1438
8IFE|1|1A|C|1439
8IFE|1|1A|U|1440
8IFE|1|1A|C|1441
8IFE|1|1A|C|1442
8IFE|1|1A|A|1443
8IFE|1|1A|G|1444
8IFE|1|1A|U|1445
8IFE|1|1A|C|1446
8IFE|1|1A|C|1447
8IFE|1|1A|G|1448
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2A
- 60S ribosomal protein L7
- Chain 2K
- 60S ribosomal protein L18
- Chain 2V
- 60S ribosomal protein L29
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