HL_8IFE_048
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- GGGUCGGUCGCGGCCGGCGCCUAGC
- Length
- 25 nucleotides
- Bulged bases
- 8IFE|1|1A|G|2903, 8IFE|1|1A|G|2910, 8IFE|1|1A|C|3584, 8IFE|1|1A|C|3587, 8IFE|1|1A|U|3595, 8IFE|1|1A|A|3596
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFE_048 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.317
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8IFE|1|1A|G|2901
8IFE|1|1A|G|2902
8IFE|1|1A|G|2903
8IFE|1|1A|U|2904
8IFE|1|1A|C|2905
8IFE|1|1A|G|2906
8IFE|1|1A|G|2907
8IFE|1|1A|U|2908
8IFE|1|1A|C|2909
8IFE|1|1A|G|2910
8IFE|1|1A|C|3584
8IFE|1|1A|G|3585
8IFE|1|1A|G|3586
8IFE|1|1A|C|3587
8IFE|1|1A|C|3588
8IFE|1|1A|G|3589
8IFE|1|1A|G|3590
8IFE|1|1A|C|3591
8IFE|1|1A|G|3592
8IFE|1|1A|C|3593
8IFE|1|1A|C|3594
8IFE|1|1A|U|3595
8IFE|1|1A|A|3596
8IFE|1|1A|G|3597
8IFE|1|1A|C|3598
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2L
- 60S ribosomal protein L19
- Chain 2t
- 40S ribosomal protein S8
- Chain 2v
- 40S ribosomal protein S11
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