HL_8IFE_076

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_076 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2689

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IFE|1|1A|C|5021
8IFE|1|1A|U|5022
8IFE|1|1A|C|5023
8IFE|1|1A|C|5024
8IFE|1|1A|C|5025
8IFE|1|1A|U|5026
8IFE|1|1A|C|5027
8IFE|1|1A|G|5028

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2O

60S ribosomal protein L22

Chain 2t

40S ribosomal protein S8