HL_8IFE_080
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8IFE|1|1C|A|82
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFE_080 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5779
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8IFE|1|1C|G|68
8IFE|1|1C|U|69
8IFE|1|1C|G|70
8IFE|1|1C|A|71
8IFE|1|1C|A|72
8IFE|1|1C|U|73
8IFE|1|1C|U|74
8IFE|1|1C|G|75
8IFE|1|1C|C|76
8IFE|1|1C|A|77
8IFE|1|1C|G|78
8IFE|1|1C|G|79
8IFE|1|1C|A|80
8IFE|1|1C|C|81
8IFE|1|1C|A|82
8IFE|1|1C|C|83
8IFE|1|1C|A|84
8IFE|1|1C|U|85
8IFE|1|1C|U|86
8IFE|1|1C|G|87
8IFE|1|1C|A|88
8IFE|1|1C|U|89
8IFE|1|1C|C|90
Current chains
- Chain 1C
- 5.8S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2S
- 60S ribosomal protein L26
- Chain 2b
- 60S ribosomal protein L35
- Chain 2d
- 60S ribosomal protein L37
- Chain 2f
- 60S ribosomal protein L39
Coloring options: