HL_8IFE_092

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8IFE|1|2m|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_092 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1183

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8IFE|1|2m|C|462
8IFE|1|2m|C|463
8IFE|1|2m|A|464
8IFE|1|2m|A|465
8IFE|1|2m|G|466
8IFE|1|2m|G|467

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2P

60S ribosomal protein L23

Chain 3H

40S ribosomal protein S6